species:   Bodot
pid:       PID1068
parent:    Bd-milR21
paralog:   
locus:     SACU01000014.1:937592-937732
matures:   ['UGGGUUCUGGGGCUUGGGGUUUUG', 'AGAUGCCGAGCCUUUGAUUGCCUUUG']
srr:       SRR8374847
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374847.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374847.cram SACU01000014.1:937592-937732

0 out of bounds
9 alignments
9 proper strand
7 stranded perfect matches

        **************************                                                             ****************************                  
CUCUUUAUUAUGGGUUCUGGGGCUUGGGGUUUUGCUAUUGGUUUUCUUGGGUGGGACUGGGCGGUUGGUGGGGAAUGCGUCGAGCAAAUCAUUCCGGAGAUGCCGAGCCUUUGAUUGCCUUUGAGUUUGCGAUCCUGGAGG
((((...(((.((((((.(((((((((.(((((.....((((((.((((((((...((.(.(....).).))...))).))))).)))))).....))))).))))))))).))..)))).)))............)))).
----------UGGGUUCUGGGGCUUGGGGUUUUG----------------------------------------------------------------------------------------------------------- l=24 a=3 c
-------------------------------------------------------------------------------------------------AGAUGCCGAGCCUUUGAUUGCCUUUG------------------ l=26 a=0 c*
----------UGGGUUCUGGGGCUUGGGGUUUUG----------------------------------------------------------------------------------------------------------- l=24 a=3 ma
-------------------------------------------------------------------------------------------------AGAUGCCGAGCCUUUGAUUGCCUUUG------------------ l=26 a=0 ma*

-------------------------------------------------------------------------AAUGCGUCGAGCAAAUCAUUCCGGA------------------------------------------- l=25 a=1 
--------------------------------------------------------CUGGGCGGUUGGUGGGGAAUGCu-------------------------------------------------------------- l=23 a=1 
-----------------------------------UAUUGGUUUUCUUGGGUGa--------------------------------------------------------------------------------------- l=19 a=1 
----------UGGGUUCUGGGGCUUGGGG---------------------------------------------------------------------------------------------------------------- l=19 a=3 
----------UGGGUUCUGGGGCUUGGGGUUUUG----------------------------------------------------------------------------------------------------------- l=24 a=3 (c,ma)

mb-01111
ax-1011011
ku-01
ss-101111111100
fn-111
